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OVERVIEW

NATALIE JION MYUNG SUH CHOI

2022-2023
Analyzing Various Nanoparticles Used in Nano-Drug Delivery Systems In Treating Pancreatic Cancer Through Machine Learning Algorithms

  • Worked as a research intern under the guidance of Dr. Richardson, Ph.D. in the Molecular Physiology and Biophysics department at Vanderbilt University

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2021-2022
Modeling ADHD in Drosophila: Investigating the effects of glucose on dopamine production demonstrated by locomotion

  • California Regional Finalist in At-Large BioGENEius Challenge (2021); 3rd Place State Level 

  • 3rd Place in Biological Science and Engineering Category (2021 Synopsys Silicon Valley Science and Technology Championship)

  • Independent research published as first author under Cornell University (Link to Publication)

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2020-2021
Investigating the capabilities of various phenolic compounds to inhibit bacterial quorum sensing modeled by Serratia Marcescens

  • 2nd Place in Biological Science and Engineering Category (2020 Synopsys Silicon Valley Science and Technology Championship)

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2019-2020
Comparing the Photoprotection Capabilities of the Phytochemical Anthocyanin to the Chemical Oxybenzone

  • Regional Finalist At-Large BioGENEius Challenge (2020)

  • 2nd Place Award in Biological Science and Engineering Category (2019 Synopsys Silicon Valley Science and Technology Championship)

  • Certificate of Distinctive Excellence, American Chemical Society, Silicon Valley, SVACS (2019 Synopsys Silicon Valley Science and Technology Championship)

Modeling ADHD in Drosophila: Investigating the effects of glucose on dopamine production demonstrated by locomotion

2022-2023

ADHD is a common neuropsychiatric disorder primarily caused by imbalances of dopamine in the brain. The relevance between a patient's sugar consumption and dopamine production is poorly understood. This study analyzed the hyperactivity response to startle stimuli in Drosophila melanogaster in order to model the effects of glucose on dopamine production. Flies were raised on varying levels of added glucose in their diets (0%, 1%, 3%, 5%), then subjected to a series of brief air puffs to trigger hyperactivity. The movement of the drosophila was recorded using a birds-eye view camera, then analyzed by the Shiny-R DAM software, which quantified the hyperactivity of the drosophila on several parameters (rest velocity, peak velocity, cool down time). Intensity of the hyperactivity response (peak velocity - rest velocity), was 8.47 mm/s, 7.74 mm/s, 6.29 mm/s and 6.24 mm/s for the 5%, 3%, 1% and control groups, respectively. Persistence of the hyperactivity response (cool down time) for each experimental group and control group was 215 s, 190 s, 130 s, and 115 s for the 5%, 3%, 1% and control group (0%), respectively. The higher the glucose consumption, the more intense and persistent hyperactivity was observed (p<0.05), suggesting that higher glucose consumption is associated with lower dopamine production in the brain. The notion that chronic sugar consumption may directly alter dopamine levels within the neural system holds significant implications for ADHD patients.

Analyzing Various Nano-drug Delivery Systems In Treating Pancreatic Cancer Through Machine Learning Algorithms

2021-2022

Pancreatic cancer has the worst mortality rate and the lowest overall survival (OS) in all cancers [9]. The incidence of pancreatic cancer has gradually increased with 42,470 predicated new cases in the United States in 2009, in which 35,240 will die [9]. Sultana et. al concluded that only about 10% of patients are presented with resectable disease and are suitable for potentially curative surgery [12]. Even for patients who are qualified for surgery, aggressive metastasis often occurs after the operation, which is highly resistant to conventional chemotherapy and radiation therapy. Patients with locally advanced disease have 6–10 months of median survival, and patients with metastatic disease only have 3–6 months of median survival [13]. Thus, rigorous analysis of novel treatment mechanisms is urgently needed. This study used deep learning machine algorithms to compare and contrast the effectiveness of various nanoparticles in treating pancreatic cancer upon various parameters.

Investigating the capabilities of various phenolic compounds to inhibit bacterial quorum sensing modeled by Serratia Marcescens

2021-2022

Failure of current antibiotics to control infections due to the development of resistance makes it essential to discover alternative drugs and methods to inhibit the virulent activities of pathogens. Bacterial quorum sensing is a cell-to-cell communication mechanism that enables bacteria to initiate group activities that would be insignificant when performed by a single bacterium. Such group activity includes virulence, indicating that the inhibition of quorum sensing can be a major antivirulence strategy that may combat the antibiotic resistance crisis. The aim of this study was to assess the anti-quorum sensing activity of the phenolic compounds: cinnamaldehyde and curcumin, which are chemicals often used in traditional medicine across East Asia. The anti-quorum sensing activity was evaluated by testing the inhibition of prodigiosin production of Serratia marcescens and by evaluating the swarming motility in Serratia marcescens, both of which are phenotypes regulated by quorum sensing. Because phenolic compounds have been implicated to show potential as quorum sensing inhibitors, it was hypothesized that cinnamaldehyde and curcumin will decrease prodigiosin production and inhibit swarming motility. To evaluate prodigiosin production, S. marcescens was treated with the phenolic compounds then cultured. Because prodigiosin is a red pigment produced by S. marcescens, prodigiosin production was quantified using spectrophotometry by attaining optical density. For the swarming motility assay, S. marcescens was cultured on agar plates that were treated. Swarming motility was then measured using an image processing java program, which quantified the area the bacteria were able to swarm. Both phenolic treatments strongly inhibited the production of prodigiosin in S. marcescens, reducing its production in comparison with a control with no treatment. The phenolic treatments were also able to significantly inhibit swarming motility in S. marcescens. No inhibition of microbial growth was observed at the concentrations tested for quorum sensing inhibition. Overall, these results indicate that the phenolic compounds cinnamaldehyde and curcumin present quorum sensing inhibitory activity, offering major implications for the pharmaceutical industries.

Comparing the Photoprotection Capabilities of the Phytochemical Anthocyanin to the Chemical Oxybenzone

2019-2020

Oxybenzone is an active photoprotective chemical commonly used in commercial sunscreen. While the chemical absorbs UVB and UVA II radiation and thus provides a chemical shield for the skin, the chemical is hazardous to the marine ecosystem. Oxybenzone is particularly harmful for the coral reef population for the chemical catalyzes hydrogen peroxide, a known bleach agent. A small amount is sufficient to cause corals to bleach and become more susceptible to viral infections. The Hawaiian government, recognizing the ramifications of the chemical, recently signed a bill that would ban all sunscreens containing oxybenzone. Furthermore, oxybenzone is a known endocrine disruptor and is identified to be the cause of various reproductive issues and hormonal diseases. Thus, the ban and the health hazard raise the necessity for an alternate photoprotective chemical that is both eco-friendly and safe for human application. One potential alternative is anthocyanins, which are water soluble pigments found in plants. By having numerous double bonds and oxygen lone pairs in its molecular structure, anthocyanins are able to absorb large amounts of UV radiation, and thus provide protection for plants from intense UV radiation that otherwise may degrade important photolabile molecules. This property makes anthocyanins a potential photoprotection chemical alternative to oxybenzone. The overall purpose of this project is to exploit the potential of the phytochemical anthocyanin as an alternative for oxybenzone in commercial sunscreen. Anthocyanins were extracted from red cabbages and a hexane partition was performed on the solution for further isolation and purification. The concentration of anthocyanin of the solution was then calculated using the pH differential method. Pure oxybenzone was diluted in ethanol to the same concentration. In order to compare the photoprotective capabilities of the two chemicals, the survival rate of E.coli under exposure to UV radiation was compared between a bacterial group that was protected with the anthocyanin solution, a bacterial group that was protected with the oxybenzone solution and a control group that received no protection. Results supported the hypothesis that the bacterial groups protected by anthocyanins and protected by oxybenzone demonstrate similar rates of survival. Furthermore, the bacterial groups that received protection by anthocyanins and oxybenzone demonstrated significantly higher survival rates compared to control groups that did not receive any protection. Thus, it can be concluded that anthocyanin has photoprotective properties that function outside the plant body and is viable to replace oxybenzone in commercial sunscreen.  

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